deepblink
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deepblink.augment module
deepblink.cli package
deepblink.data module
deepblink.datasets package
deepblink.inference module
deepblink.io module
deepblink.losses module
deepblink.metrics module
deepblink.models package
deepblink.networks package
deepblink.optimizers module
deepblink.training module
deepblink.util module
deepblink
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
A
absolute_coordinate() (in module deepblink.data)
adam() (in module deepblink.optimizers)
amsgrad() (in module deepblink.optimizers)
augment_batch_baseline() (in module deepblink.augment)
B
basename() (in module deepblink.io)
binary_crossentropy() (in module deepblink.losses)
C
categorical_crossentropy() (in module deepblink.losses)
combined_bce_rmse() (in module deepblink.losses)
combined_dice_rmse() (in module deepblink.losses)
combined_f1_rmse() (in module deepblink.losses)
compute_metrics() (in module deepblink.metrics)
D
data_filename (deepblink.datasets.Dataset attribute)
Dataset (class in deepblink.datasets)
deepblink.augment (module)
deepblink.cli (module)
deepblink.data (module)
deepblink.datasets (module)
deepblink.datasets.sequence (module)
deepblink.datasets.spots (module)
deepblink.inference (module)
deepblink.io (module)
deepblink.losses (module)
deepblink.metrics (module)
deepblink.models (module)
deepblink.models.spots (module)
deepblink.networks (module)
deepblink.networks.unet (module)
deepblink.optimizers (module)
deepblink.training (module)
deepblink.util (module)
delete_non_unique_columns() (in module deepblink.util)
dice_loss() (in module deepblink.losses)
dice_score() (in module deepblink.losses)
E
euclidean_dist() (in module deepblink.metrics)
evaluate() (deepblink.models.Model method)
F
f1_integral() (in module deepblink.metrics)
f1_loss() (in module deepblink.losses)
f1_score() (in module deepblink.losses)
(in module deepblink.metrics)
fit() (deepblink.models.Model method)
flip() (in module deepblink.augment)
G
gaussian_noise() (in module deepblink.augment)
get_coordinate_list() (in module deepblink.data)
get_from_module() (in module deepblink.util)
get_intensities() (in module deepblink.inference)
get_prediction_matrix() (in module deepblink.data)
get_probabilities() (in module deepblink.inference)
grab_files() (in module deepblink.io)
I
illuminate() (in module deepblink.augment)
image_size (deepblink.datasets.spots.SpotsDataset attribute)
(deepblink.datasets.SpotsDataset attribute)
L
linear_sum_assignment() (in module deepblink.metrics)
load_data() (deepblink.datasets.Dataset method)
(deepblink.datasets.SpotsDataset method)
(deepblink.datasets.spots.SpotsDataset method)
load_image() (in module deepblink.io)
load_model() (in module deepblink.io)
load_npz() (in module deepblink.io)
load_prediction() (in module deepblink.io)
M
metrics (deepblink.models.Model attribute)
(deepblink.models.SpotsModel attribute)
(deepblink.models.spots.SpotsModel attribute)
Model (class in deepblink.models)
N
next_multiple() (in module deepblink.data)
next_power() (in module deepblink.data)
normalize_dataset() (deepblink.datasets.Dataset method)
(deepblink.datasets.SpotsDataset method)
(deepblink.datasets.spots.SpotsDataset method)
normalize_image() (in module deepblink.data)
O
offset_euclidean() (in module deepblink.metrics)
on_epoch_end() (deepblink.datasets.sequence.SequenceDataset method)
(deepblink.datasets.SequenceDataset method)
P
precision_score() (in module deepblink.losses)
(in module deepblink.metrics)
predict() (in module deepblink.inference)
predict_on_image() (deepblink.models.spots.SpotsModel method)
(deepblink.models.SpotsModel method)
predict_pixel_size() (in module deepblink.util)
predict_shape() (in module deepblink.util)
prepare_data() (deepblink.datasets.Dataset method)
(deepblink.datasets.SpotsDataset method)
(deepblink.datasets.spots.SpotsDataset method)
R
recall_score() (in module deepblink.losses)
(in module deepblink.metrics)
relative_shuffle() (in module deepblink.util)
remove_falses() (in module deepblink.util)
rmse() (in module deepblink.losses)
rmsprop() (in module deepblink.optimizers)
rotate() (in module deepblink.augment)
run_experiment() (in module deepblink.training)
S
securename() (in module deepblink.io)
SequenceDataset (class in deepblink.datasets)
(class in deepblink.datasets.sequence)
SpotsDataset (class in deepblink.datasets)
(class in deepblink.datasets.spots)
SpotsModel (class in deepblink.models)
(class in deepblink.models.spots)
T
train_model() (in module deepblink.training)
train_valid_split() (in module deepblink.util)
translate() (in module deepblink.augment)
U
unet() (in module deepblink.networks)
(in module deepblink.networks.unet)
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